Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0389
         (627 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P35603 Cluster: AP-2 complex subunit mu; n=23; Eukaryot...    35   1.8  
UniRef50_Q96CW1 Cluster: AP-2 complex subunit mu-1; n=94; Fungi/...    34   3.2  

>UniRef50_P35603 Cluster: AP-2 complex subunit mu; n=23;
           Eukaryota|Rep: AP-2 complex subunit mu - Caenorhabditis
           elegans
          Length = 441

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 428 VRYIGRSGLYETRC 441


>UniRef50_Q96CW1 Cluster: AP-2 complex subunit mu-1; n=94;
           Fungi/Metazoa group|Rep: AP-2 complex subunit mu-1 -
           Homo sapiens (Human)
          Length = 435

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSG+YETRC
Sbjct: 422 VRYIGRSGIYETRC 435


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,971,479
Number of Sequences: 1657284
Number of extensions: 5478695
Number of successful extensions: 8582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8582
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)