Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0389
         (627 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070712-1|AAL48183.1|  437|Drosophila melanogaster SD05403p pro...    35   0.10 
AJ005962-1|CAA06785.1|  437|Drosophila melanogaster clathrin-ass...    35   0.10 
AF110232-1|AAF14248.1|  437|Drosophila melanogaster clathrin-ass...    35   0.10 
AE014297-3160|AAF56002.3|  437|Drosophila melanogaster CG7057-PB...    35   0.10 
AE014297-3159|AAF56001.1|  437|Drosophila melanogaster CG7057-PA...    35   0.10 
X01472-3|CAA25703.1|  472|Drosophila melanogaster protein ( Dros...    30   2.2  

>AY070712-1|AAL48183.1|  437|Drosophila melanogaster SD05403p
           protein.
          Length = 437

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 424 VRYIGRSGLYETRC 437


>AJ005962-1|CAA06785.1|  437|Drosophila melanogaster
           clathrin-associated protein protein.
          Length = 437

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 424 VRYIGRSGLYETRC 437


>AF110232-1|AAF14248.1|  437|Drosophila melanogaster
           clathrin-associated adaptor complexAP-2 medium chain
           protein.
          Length = 437

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 424 VRYIGRSGLYETRC 437


>AE014297-3160|AAF56002.3|  437|Drosophila melanogaster CG7057-PB,
           isoform B protein.
          Length = 437

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 424 VRYIGRSGLYETRC 437


>AE014297-3159|AAF56001.1|  437|Drosophila melanogaster CG7057-PA,
           isoform A protein.
          Length = 437

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 424 VRYIGRSGLYETRC 437


>X01472-3|CAA25703.1|  472|Drosophila melanogaster protein (
           Drosophila melanogastercopia-like element 17.6. ).
          Length = 472

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 328 TWNRLQS*TLKDIP*VIIFNFRIKSNKMVRFQLCFIKINS 447
           TWN  Q+ +LK        N +IK NKM++   C I+INS
Sbjct: 324 TWNLTQT-SLKQNCQNSFNNIKIKGNKMIKVTQCKIEINS 362


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,280,578
Number of Sequences: 53049
Number of extensions: 222954
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)