Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0389
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    35   0.055
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    35   0.055
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    35   0.055

>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 428 VRYIGRSGLYETRC 441


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 422 VRYIGRSGLYETRC 435


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 12  VRYIGRSGLYETRC 53
           VRYIGRSGLYETRC
Sbjct: 428 VRYIGRSGLYETRC 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,432,935
Number of Sequences: 27780
Number of extensions: 132956
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)