Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0388
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3IS92 Cluster: Peptidase M48, Ste24p; n=2; Chroococcal...    35   2.0  
UniRef50_Q312M7 Cluster: DNA topoisomerase III; n=1; Desulfovibr...    33   7.9  
UniRef50_A7T3B4 Cluster: Predicted protein; n=1; Nematostella ve...    33   7.9  

>UniRef50_A3IS92 Cluster: Peptidase M48, Ste24p; n=2;
           Chroococcales|Rep: Peptidase M48, Ste24p - Cyanothece
           sp. CCY 0110
          Length = 646

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 151 PKEHHGDVVAAKVYSTQMSNVTPNCHCLRL*MPPRNEEKTKFYGQMREQSETMLIN 318
           P+  H  +   +V   +  N T N   L L  PP  EEKT    + +E+ E  ++N
Sbjct: 116 PQVEHPLITPVQVAENETENSTDNAEALSLEKPPEVEEKTTENQERKEEEEDTILN 171


>UniRef50_Q312M7 Cluster: DNA topoisomerase III; n=1; Desulfovibrio
           desulfuricans G20|Rep: DNA topoisomerase III -
           Desulfovibrio desulfuricans (strain G20)
          Length = 805

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 144 NEAERTSRRCRSCEGILDADEQRHTQLSLPAPLDAATKRRE 266
           ++AE    RC+   G++DA E R      P P D  T +RE
Sbjct: 312 DDAEAVIGRCQGGTGVVDATENRKGSQKPPLPFDLTTLQRE 352


>UniRef50_A7T3B4 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 378

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 405 INWTVIALIKWILF*STNVVRTLCI*FCVRIFNSKVYLVETHSVYIKDCNLI 560
           + W +  ++ W+   + ++V  LC  F + IFN +  L  +H  +++ C+L+
Sbjct: 145 VYWVLNYIVYWVFIVNCSLVTNLCFVFFL-IFNQEFILHLSHCFFVEKCSLL 195


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,513,608
Number of Sequences: 1657284
Number of extensions: 10373112
Number of successful extensions: 24432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24413
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)