Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0388
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183...    28   7.4  
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985     27   9.7  

>11_06_0720 -
           26617665-26617781,26617851-26617924,26618218-26618331,
           26619375-26619399,26619564-26619620,26620273-26622888
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 631 TTLCDVPPTQQGSNYFSHNFHMHSMRLQS 545
           TTLC +      S++FSH   +HS+ L+S
Sbjct: 247 TTLCSLMSVCASSDHFSHGSGIHSLCLRS 275


>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
          Length = 773

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108 ERLAESSDNLDL-NEAERTSRRCRSCEGILDADEQRHTQLSLPAPLDAAT 254
           E++  S +++ + NE E      R    +  +DE   TQ SLP+ + +A+
Sbjct: 720 EQIIRSDESIQIINEQESVHSEARPISSLQSSDETSTTQYSLPSEILSAS 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,136
Number of Sequences: 37544
Number of extensions: 283439
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)