Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0388
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                27   9.9  

>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 634 ITTLCDVP--PTQQGSNYFSHNFHMHSMRLQSLIYT-ECVSTRYTLELNMRTQNYIHNVR 464
           IT  C++   P Q   ++  HN + H+   +++I+T    +T  T+ +N   +N I  + 
Sbjct: 214 ITITCNISTTPPQHHYHHHHHNHYSHNHHHRNIIFTITTTTTIVTITIN-HHRNIIFTIT 272

Query: 463 TT 458
           TT
Sbjct: 273 TT 274


>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1494

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 628 TLCDVPPTQQGSNYFSHNFHMHSMRLQSLIYTECVSTRYTLELNMRTQNYIHNVRTT 458
           T C    T + + Y + ++ +H ++  +  +T   +TRYT+  N R   Y +N R T
Sbjct: 726 TRCTTISTTRYTVYNNQHYTLHGVQQSATRFTTISTTRYTVYNNQRYTVY-NNQRYT 781


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 192 VYLRSYDISVMFFRLRLNLNYHYFQLV 112
           +YLR Y  + +FF L L +++H F  +
Sbjct: 3   LYLRKYVFAKLFFLLFLTVSFHVFMFI 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,173,755
Number of Sequences: 59808
Number of extensions: 375148
Number of successful extensions: 1028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)