Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0388
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-396|AAF47598.1| 2517|Drosophila melanogaster CG11814-PA...    32   0.58 
AF129420-1|AAD29408.1| 1685|Drosophila melanogaster AXO protein.       29   5.4  
AE014296-890|AAF47929.2| 1765|Drosophila melanogaster CG18296-PA...    29   5.4  
M12896-1|AAA28734.1|  381|Drosophila melanogaster protein ( D.me...    29   7.2  
BT003450-1|AAO39453.1|  381|Drosophila melanogaster RH44056p pro...    29   7.2  
AE014297-2590|AAF55601.1|  381|Drosophila melanogaster CG16740-P...    29   7.2  

>AE014296-396|AAF47598.1| 2517|Drosophila melanogaster CG11814-PA
            protein.
          Length = 2517

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 240  KAQAMTIGCDVAHLRRVYLRSYDISVMFFRLRLNLNYHYFQLVSRADCAKIFLEI 76
            + +   + CD+A++  ++L+ Y      F + L+ N   F  +  AD  KI  E+
Sbjct: 1706 RCRYFNVNCDIANITEIWLKRYQHQETAFEILLDTNKSLFFSLQNADDWKIMREV 1760


>AF129420-1|AAD29408.1| 1685|Drosophila melanogaster AXO protein.
          Length = 1685

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 535  YILKIVISLSA-CGNYVKSNCYPAVLEEHRIRW 630
            ++L+ +IS S  C  Y+K +CY A LE H   W
Sbjct: 958  HMLQELISHSLYCTQYIKYDCYRAQLELHSATW 990


>AE014296-890|AAF47929.2| 1765|Drosophila melanogaster CG18296-PA
            protein.
          Length = 1765

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 535  YILKIVISLSA-CGNYVKSNCYPAVLEEHRIRW 630
            ++L+ +IS S  C  Y+K +CY A LE H   W
Sbjct: 961  HMLQELISHSLYCTQYIKYDCYRAQLELHSATW 993


>M12896-1|AAA28734.1|  381|Drosophila melanogaster protein (
           D.melanogaster opsingene Rh2, complete cds. ).
          Length = 381

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 411 WTVIALIKWILF*STNVVRTLCI*FCVRIFNSKVYLVETHSVYI 542
           WTV+ LI W  +     +    I +  R++N + YL+ T+S+++
Sbjct: 187 WTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLI-TYSLFV 229


>BT003450-1|AAO39453.1|  381|Drosophila melanogaster RH44056p
           protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 411 WTVIALIKWILF*STNVVRTLCI*FCVRIFNSKVYLVETHSVYI 542
           WTV+ LI W  +     +    I +  R++N + YL+ T+S+++
Sbjct: 187 WTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLI-TYSLFV 229


>AE014297-2590|AAF55601.1|  381|Drosophila melanogaster CG16740-PA
           protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 411 WTVIALIKWILF*STNVVRTLCI*FCVRIFNSKVYLVETHSVYI 542
           WTV+ LI W  +     +    I +  R++N + YL+ T+S+++
Sbjct: 187 WTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLI-TYSLFV 229


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,460,658
Number of Sequences: 53049
Number of extensions: 522557
Number of successful extensions: 1229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)