Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0388
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U64836-3|AAG24058.1|  175|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 504 SKVYLVETHSVYIKDCNLIECMWKLCEK*LLPCCVGGTSHKV 629
           S V L E H + I++    E   K  EK +  CC G +S KV
Sbjct: 136 SNVLLPEKHCIVIENSKYYEESVKFVEKWMKKCCYGVSSVKV 177


>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -3

Query: 195 RVYLRSYDISVMFFRLRLNLNYHYFQLVSRADCAKIFLEIRSSTRRYCC 49
           R Y+   D  V+ F L          ++S+ADC  +   + S    Y C
Sbjct: 398 RFYVAKSDFEVLEFDLETENGKELKSIISQADCGSVSRMVSSPCGNYIC 446


>U64836-3|AAG24058.1|  175|Caenorhabditis elegans Hypothetical
           protein F10G2.4 protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 123 SSDNLDLNEAERTSRRCRSCEGILDADEQRHTQLSLPAPL 242
           + +N+ +N+ ++ SR+ R    + D+DE+R   +    PL
Sbjct: 96  NENNITVNKKKKRSRKIRRLRDVQDSDEERPKPVIALVPL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,226,644
Number of Sequences: 27780
Number of extensions: 279222
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)