Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0388
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77520.1 68414.m09027 O-methyltransferase family 2 protein si...    30   1.5  
At5g57370.1 68418.m07168 expressed protein low similarity to nuc...    28   4.7  
At2g43255.1 68415.m05376 expressed protein                             28   6.1  
At1g55050.1 68414.m06288 expressed protein ; expression supporte...    28   6.1  

>At1g77520.1 68414.m09027 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase GB:O23760
           [Clarkia breweri], [SP|Q00763] [Populus tremuloides]
          Length = 381

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 283 VHKISFSLRFVAASKGAGNDNWV*RCSSASSIPSQ 179
           V K +F L  +     AGND W+  C  A S+P++
Sbjct: 45  VLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTK 79


>At5g57370.1 68418.m07168 expressed protein low similarity to
           nucleic acid binding protein [Homo sapiens] GI:431953
          Length = 219

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 153 ERTSRRCRSCEGILDADEQRHTQLSLPAPLDAATKRRENE 272
           ER   R RS +   D D QRH +   P+P DA +++R  +
Sbjct: 71  ERYRSRSRSIDRDRDRDRQRHHRRRSPSP-DAPSRKRPRQ 109


>At2g43255.1 68415.m05376 expressed protein
          Length = 214

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 607 TQQGSNYFSHNFHMHSMRLQSLIYTECVSTRYTLELNMRTQNYIHNV 467
           TQ G +Y S  +  H+M + +    E +  R T+ +N+R    I ++
Sbjct: 2   TQAGLSYMSRKYDEHTMGVDTKKSLEIIHLRGTVAVNLRPYTKIEDL 48


>At1g55050.1 68414.m06288 expressed protein ; expression supported
           by MPSS
          Length = 914

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 126 SDNLDLNEAERTSRRCRSCEGILDADEQRHTQLSLPA 236
           SDN+D+NE+ ++ +R RS  G  D +     +++L A
Sbjct: 83  SDNIDMNESLKSLKRKRSRRGGSDGNSGSKRRMNLEA 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,466
Number of Sequences: 28952
Number of extensions: 236788
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)