Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0387
         (630 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0A235 Cluster: O-antigen polymerase; n=4; Salmonella|R...    35   1.4  
UniRef50_Q4X9V0 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_A2EEY1 Cluster: Putative uncharacterized protein; n=1; ...    32   9.9  

>UniRef50_P0A235 Cluster: O-antigen polymerase; n=4; Salmonella|Rep:
           O-antigen polymerase - Salmonella typhimurium
          Length = 407

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +2

Query: 425 IYSSRPLQYTYMIKILYTIQFIYY-SIILSCLYTTRKS--NKFSNTK---RLFKSNLIFT 586
           +Y S    YT      YT    Y  S ++S LYT RK   NK SNTK   R   ++L+FT
Sbjct: 51  VYLSEVQNYTVEYLFFYTCYITYIASFVISYLYTQRKPIYNK-SNTKNKPRYVFTSLLFT 109

Query: 587 F*SDLFYL 610
           F + + YL
Sbjct: 110 FLAFIIYL 117


>UniRef50_Q4X9V0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 50

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 479 IQFIYYSIILSCLYTTRKSNKFSNTKRLFKSNL 577
           + F+Y++  ++CL+T  K N F N K   K N+
Sbjct: 14  LYFMYFANFMNCLFTNLKENTFKNVKEKIKRNV 46


>UniRef50_A2EEY1 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 745

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 491 YYSIILSCLYTTRKSNKFSNTKRLFKSNLIF 583
           +Y+I+   LY T + N F+N K +FKS+L F
Sbjct: 414 FYNILRRGLYGTSEGNYFANDKNIFKSDLGF 444


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,863,633
Number of Sequences: 1657284
Number of extensions: 10703280
Number of successful extensions: 21431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21428
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)