Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0387
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.52 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.69 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    25   0.69 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   1.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   3.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 443 LQYTYMIKILYTIQFIYYS--IILSCLY 520
           + Y Y   I++TI  ++Y   IIL C+Y
Sbjct: 212 IYYFYSAFIIFTIHLLFYCVLIILLCIY 239



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 467 ILYTIQFIYYSIILSCLY 520
           +L T  F Y  IIL C+Y
Sbjct: 97  LLCTYYFYYAFIILLCVY 114


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 437 RPLQYTYMIKILYTIQFIYYSIILSCLYTTRKSNKF 544
           RP    + + IL    F Y  +IL C+YTT   + F
Sbjct: 313 RPSSLRFCLNILSI--FTYVPMILYCVYTTATYDSF 346


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 437 RPLQYTYMIKILYTIQFIYYSIILSCLYTTRKSNKF 544
           RP    + + IL    F Y  +IL C+YTT   + F
Sbjct: 38  RPSSLRFCLNILSI--FTYVPMILYCVYTTATYDSF 71


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 449 YTYMIKILYTIQFIYYSI----ILSCLYTTRKSNKFSNT 553
           + Y I  L+T+ +IYYS+    I++  YT  K   F++T
Sbjct: 147 FCYFI-YLFTVYYIYYSVHEASIINFGYTLAKFMIFTST 184



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 448 IHLYD*NFIYYSIH 489
           I+L+   +IYYS+H
Sbjct: 151 IYLFTVYYIYYSVH 164


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 543 SVTRNVFSNLI*YSLFDRICSIYRGSGTP 629
           S T++     + Y+  DR   ++RGS TP
Sbjct: 76  SSTKSGSPGFLTYTKADRDVDLFRGSSTP 104


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 392 HELVPHLDNKKIYSSRPLQY 451
           H+L+ H    K+Y+S   +Y
Sbjct: 137 HQLLGHFGATKVYNSMKREY 156


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 361 GSGNHLTPSGP*TRTSS 411
           GSGN+  P GP +  S+
Sbjct: 530 GSGNNQPPGGPSSHVSA 546


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,738
Number of Sequences: 336
Number of extensions: 2999
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)