Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0387
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.2  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   3.9  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   5.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 531 KVISSVTRNVFSNLI*YSLFDRICSIYRG 617
           K+ S VT    S  I Y LFDRIC +Y G
Sbjct: 359 KMTSFVTAYQASEKI-YKLFDRICVLYAG 386


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 324 CDMSSKSQLLQYSGYPIIQAETQAVSQQK*AG 229
           CD S  +QLL+YS Y I+       +Q +  G
Sbjct: 457 CDQSFLNQLLEYSPYRIVYISCNVHTQARDVG 488


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 142 DFHGEKITSCKKNQTRKKYNF 204
           DF+G ++ SC  +Q  K Y+F
Sbjct: 23  DFYGRRMVSCSADQRVKVYDF 43


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 488 IYYSIILSCLYTTRKSNKFSNTKRLFKSNLI 580
           I   ++ +C+  T+ S +FS   R  KS LI
Sbjct: 27  IITKVLTACMGQTQNSERFSTASRSVKSGLI 57


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 362 PIDINNVKAATHLVT*VQSLSFYSTAATPSFKLKHKLY 249
           P++  + +A   +   VQ LSFY  + +P+  L   LY
Sbjct: 37  PVEDASEEAIRSITKIVQDLSFYEFSGSPALLLHPDLY 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,438
Number of Sequences: 5004
Number of extensions: 47853
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)