Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0387
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    28   7.0  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    27   9.3  

>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 455 YMIKILYTIQFIYYSIILSCLYTTRKSNKFSNTK--RLFKS-NLIFTF*SDL 601
           Y++  L T+  +    +L CLY  RK   F+N    RL K  N++     DL
Sbjct: 365 YIVPTLATVCSVISLTVLVCLYKRRKRRMFANNNGGRLLKDMNIVLITEKDL 416


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 183 LIFLTRRYFFTVEVNH*RFLSAYFIRKTCLRDLNTGTAASLGMNALGFLSFRPRR 19
           +I + R YF+  E    R+   ++  K+  RDL +   ASL       L   PR+
Sbjct: 153 VIPVVRTYFYVTERESKRY-DVFYYPKSVWRDLTSNAIASLNKKNFRILRGEPRK 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,848,416
Number of Sequences: 37544
Number of extensions: 272254
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)