Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0387
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)                       29   3.1  
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)
          Length = 181

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 491 YYSIILSCLYTTRKSNKFSN 550
           YYSI+L+CL+   + NK SN
Sbjct: 162 YYSIVLNCLFGKARKNKKSN 181


>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 327  PCDMSSKSQLLQ--YSGYPIIQAETQAVSQQK*AGREKLPVLTKIVF 193
            PC ++  S L Q  Y  +P+++ +  A SQ K    E   +LTK+ F
Sbjct: 949  PCSLNISSPLAQSAYCDFPLMRLKKFAWSQVKAGAPEVYHLLTKMYF 995


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,568
Number of Sequences: 59808
Number of extensions: 334670
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)