Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0387
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-3|CAB03982.1|  346|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine r...    28   6.3  

>Z81486-3|CAB03982.1|  346|Caenorhabditis elegans Hypothetical
           protein C53A5.4 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 341 LRC*YLWAPAIT*HQVGHELVPHLDNKKIYSSRPLQYTYMIKILYTIQFIY---YSIILS 511
           LRC   W+      ++G E+  H+ ++ +++  P+Q    +KI+   QF +   Y  + +
Sbjct: 224 LRCQLAWSDLDDKVEIG-EMKRHVADQNLFAKSPIQMLEFVKIVRATQFYHRPDYEKLFN 282

Query: 512 CLYTTRKSNKF 544
            L    KS K+
Sbjct: 283 LLNDAMKSAKY 293


>Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical
           protein Y69H2.7 protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 407 HLDNKKIYSSRPLQ--YTYMIKILYTIQFIYYSIILSCLYTTRKSNKFSNTKRLFKSNLI 580
           +L N  + + + L+  + Y  +    I F+   I+  C +T    N F +   +FK    
Sbjct: 194 YLQNADVIARKLLEPSFAYSFQFTVDINFVLTGIVRQCKFTYSGRNTFKSFNYMFKHKYC 253

Query: 581 FTF*SDLFYL 610
            +    LFY+
Sbjct: 254 ESENFQLFYM 263


>AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 61 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 452 TYMIKILYTIQFIYYSIILSCLYTTRKSNKFSNTKRLFKSNLIFTF 589
           T +  ++Y I      ++ SC++T   S     TK+L K  L + F
Sbjct: 189 TAIFSVIYFIVIFSLGVVTSCMFTKFSSTYEKITKKLTKIALTYCF 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,368,175
Number of Sequences: 27780
Number of extensions: 266316
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)