Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000155B9C4 Cluster: PREDICTED: similar to HLA-B asso...    36   0.79 
UniRef50_Q4H3P9 Cluster: Transcription factor protein; n=2; Cion...    35   1.4  
UniRef50_A4RMB9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_UPI0000F2BA5D Cluster: PREDICTED: similar to coiled-coi...    33   4.2  
UniRef50_Q674R7 Cluster: Autophagy-related protein 9b; n=26; Eut...    33   7.4  
UniRef50_UPI0000F1EBFC Cluster: PREDICTED: hypothetical protein;...    32   9.8  

>UniRef50_UPI000155B9C4 Cluster: PREDICTED: similar to HLA-B
           associated transcript 3, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to HLA-B associated
           transcript 3, partial - Ornithorhynchus anatinus
          Length = 419

 Score = 35.9 bits (79), Expect = 0.79
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 449 GPE-SEPW*SRGVPRSTLQPNRGAIPRMPEPXVWTTPSTVSIPQPA 583
           GP+ S+PW    VP S L P+R +  R P P    TP+  S P P+
Sbjct: 300 GPDRSQPWTRPTVPASALSPSRLSPARSPVPARSLTPTATSAPCPS 345


>UniRef50_Q4H3P9 Cluster: Transcription factor protein; n=2; Ciona
           intestinalis|Rep: Transcription factor protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 385

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 443 SLGPESEPW*SRGVPRSTLQPNRGAIPRMPEPXVWTTPS----TVSIPQPARSP 592
           S+ P + P    G P ST     G I  +P+P  WT PS    T  IPQ + SP
Sbjct: 205 SMAPNAPPS-ELGTPGSTANSQEGIIGGIPQPTSWTPPSVEEQTSPIPQNSMSP 257


>UniRef50_A4RMB9 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 920

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 491 TAGPPYSTKVLTLGRESARGVVKWQSPKTFLGPR 390
           +A P  S  V TL RE+  GVV + SP+T +G R
Sbjct: 645 SASPGPSVSVTTLSREAVPGVVSYGSPQTLIGQR 678


>UniRef50_UPI0000F2BA5D Cluster: PREDICTED: similar to coiled-coil
           domain containing 17,; n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to coiled-coil domain containing 17,
           - Monodelphis domestica
          Length = 783

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 28/95 (29%), Positives = 41/95 (43%)
 Frame = +3

Query: 231 TSIHLYLL*QRDSXFKCIGXIFLVCGPNLLRVPCA*GALGICKT*RSADVEGTPRTQECF 410
           T ++L +   RD+  + +  I    GP    +P    A        +A +   PR   C 
Sbjct: 677 TELYLRIANARDAETQALAAIDPAQGPEYRYMPSDPPACSPPSAYGTASMTLPPRQSSC- 735

Query: 411 RALPLNDSPCTLSAQSQNLGRVGGSRGQHYNQTAA 515
           +A P +  P TLS   ++ GR GG RG    Q AA
Sbjct: 736 QAAPSSFPPSTLSPAIRDPGRTGG-RGTQMGQRAA 769


>UniRef50_Q674R7 Cluster: Autophagy-related protein 9b; n=26;
           Euteleostomi|Rep: Autophagy-related protein 9b - Homo
           sapiens (Human)
          Length = 924

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 378 VEGTPRTQECFRALPLNDSPCTLSAQSQNLGRVGGSRGQHYNQTAAPSLGCPNRQ 542
           ++GT  +Q C  ALP+  +P T +  +        S G H     AP+   P++Q
Sbjct: 78  LQGTGASQSCHSALPIPATPPTQAQPAMTPASASPSWGSHSTPPLAPATPTPSQQ 132


>UniRef50_UPI0000F1EBFC Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 2475

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 446 LGPESEPW*SRGVPRSTLQPNRGAIPRMPEPXVWTTPSTVSIPQPARS 589
           L P SE + +  VP+ T+ P       +PEP  +T P+  +  QP+RS
Sbjct: 457 LSPYSEEYYAHSVPQPTVNPT------LPEPGYFTKPNAAASMQPSRS 498


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,311,227
Number of Sequences: 1657284
Number of extensions: 13634024
Number of successful extensions: 32715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32656
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)