Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    27   2.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   3.9  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    26   3.9  
SPAC8F11.02c |||diphthamide biosynthesis protein Dph3 |Schizosac...    26   5.1  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.8  

>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 50  DNKISIF*SYSVIPFTALPR*LLIFYRPMHASEHN 154
           DN + IF    V PF +  R L IF   +H  EHN
Sbjct: 240 DNTVRIF---DVKPFASAQRQLQIFEGAIHGQEHN 271


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 503 PNRGAIPRMPEPXVWTTPSTVSIPQP 580
           P+RG++PR P   + T P +++   P
Sbjct: 736 PSRGSLPRRPSSALLTNPISITKSNP 761


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = +2

Query: 482 VPRSTLQPNRGAIPRMPE-------PXVWTTPSTVSIPQPARSP 592
           VP +   P R A+P +PE       P     P   S+PQP  +P
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 234 SIHLYLL*QRDSXFKCIGXIFLVCGPNLLR 323
           ++H+ L  +R   F+CIG ++L+ GP  L+
Sbjct: 186 NLHIGLKAERMHHFECIGNLYLI-GPKFLK 214


>SPAC8F11.02c |||diphthamide biosynthesis protein Dph3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 79

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 286 DXFFWSAGRTFYEFPAPRGRSEYVRLDGLQM 378
           + F + AG   Y FP P G    + L+ LQ+
Sbjct: 10  EDFTFDAGTNLYTFPCPCGDRFEISLEDLQL 40


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 442 VQGESLSGRALKHSWVRGVPSTSA 371
           VQ ++L+ R  ++  + GVPSTSA
Sbjct: 337 VQSQALNNRQRRNQLLPGVPSTSA 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,250
Number of Sequences: 5004
Number of extensions: 53683
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)