Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642...    30   1.3  
03_02_0659 - 10241375-10241538,10241806-10241860                       29   4.0  
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    28   7.0  
05_03_0480 - 14534133-14534759,14535184-14535405                       27   9.2  
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306...    27   9.2  

>02_05_0309 +
           27762613-27763070,27763940-27764060,27764168-27764287,
           27764633-27764863,27764964-27765503
          Length = 489

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 369 TVKSYIFRAPPRRRELVEGSARRPKK 292
           T+  ++FRA P R    +GSA RPKK
Sbjct: 389 TLDHFLFRAEPLRHNDAQGSAGRPKK 414


>03_02_0659 - 10241375-10241538,10241806-10241860
          Length = 72

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 621 GIPEHQQHHLGDLAGCGIETVDGVVQTXGSGILGMAPRFGCSV 493
           G   H  H  GD +GCG   +D +  + GSG LGMA   G  V
Sbjct: 10  GGASHGMHACGDGSGCGW-LMDLI--SDGSGCLGMAASMGVEV 49


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 512 GAIPRMPEPXVWTTPSTVSIPQPARSP 592
           GA+ + PE   WT P T+  P P   P
Sbjct: 253 GAVAKRPESNAWTVP-TIGFPPPPPPP 278


>05_03_0480 - 14534133-14534759,14535184-14535405
          Length = 282

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 567 ETVDGVVQTXGSGILGMAPRFGC-SVDRGTPLLYQGSDSGPRECKG 433
           ETV   ++T G G+ G   + GC SVD       QG D G  +C G
Sbjct: 31  ETVRVDIKTAGCGLRGQRCKSGCHSVD-------QGGDDGSAQCGG 69


>03_01_0393 -
           3062859-3062972,3063027-3063311,3063472-3063759,
           3063844-3064161,3064232-3064415,3064504-3064659,
           3066394-3066620,3066734-3066804,3067090-3067534
          Length = 695

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 172 WW*QHSIVFTRVHRPIKNQQLTWKR 98
           WW Q+SI+F R  +  ++  L+W R
Sbjct: 510 WWQQYSILFCRGIKERRHDYLSWMR 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,277
Number of Sequences: 37544
Number of extensions: 391117
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)