Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   2.3  
SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40)                 29   2.3  
SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)                 29   3.1  
SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_19834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34)               27   9.4  

>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 388  VPSTSADRQVLHIPSAP*AQGTRRRFGPQTKKXYPMHLNXESLCYS 251
            V   SA+ +V         QGTR +  P+ +K YP++   + LC S
Sbjct: 919  VSRKSAEHRVPGFKEICRTQGTRLKLFPRVRKRYPVYSPSKDLCVS 964


>SB_24361| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-40)
          Length = 430

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 388 VPSTSADRQVLHIPSAP*AQGTRRRFGPQTKKXYPMHLNXESLCYS 251
           V   SA+ +V         QGTR +  P+ +K YP++   + LC S
Sbjct: 42  VSRKSAEHRVPGFKEICRTQGTRLKLFPRVRKRYPVYSPSKDLCVS 87


>SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)
          Length = 246

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 452 PESEPW*SRGVPRSTLQPNRGAIPRM--PEPXVWTTPSTVSIPQPARSP 592
           PE   +     P S+L P   + P +  P P   +TPS+  +P P+ SP
Sbjct: 141 PEKRAYAPSSTPSSSLLPPPSSSPPLSSPPPPPPSTPSSSLLPPPSSSP 189


>SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 133 RPIKNQQLTWKRSERNY 83
           RP+ NQ LTW +S+++Y
Sbjct: 229 RPLVNQMLTWSKSKKSY 245


>SB_19834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 488 RSTLQPNRGAIPRMPEPXVWTTPSTVSIPQPARSP 592
           R + QP  G  P +P+P +   P      +P+R P
Sbjct: 22  RDSTQPRLGNKPSIPDPTIAMVPLETKTRKPSRDP 56


>SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34)
          Length = 272

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 509 RGAIPRMPEPXVWTTPSTVSIPQPARSPR 595
           RG  P    P  WT P   +    ARSPR
Sbjct: 101 RGTAPEQDPPPPWTVPEQETPVDRARSPR 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,977,122
Number of Sequences: 59808
Number of extensions: 426189
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)