Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            27   0.64 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            27   0.64 
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    25   1.5  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    25   1.5  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.0  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    24   4.5  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.9  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 157  NVVTTTYRDQKMEIGNYLTRXYGNRHLFIYTY 252
            +V    Y  +K+++ +Y+   +G+ HL  Y Y
Sbjct: 1804 SVYVLVYDKRKLKVASYVKTHHGDHHLTTYMY 1835


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 157  NVVTTTYRDQKMEIGNYLTRXYGNRHLFIYTY 252
            +V    Y  +K+++ +Y+   +G+ HL  Y Y
Sbjct: 1805 SVYVLVYDKRKLKVASYVKTHHGDHHLTTYMY 1836


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -1

Query: 600 HHLGDLAGCGIETVDGVVQTXGSGILGMAPRFGCSVDRGTPLLYQGSD 457
           H L   AG G+ +      +  SG++   P  G S    + LL   ++
Sbjct: 54  HQLSAAAGVGLSSQSAQSGSLASGVMSSVPAAGASSSSSSSLLSSSAE 101


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -1

Query: 600 HHLGDLAGCGIETVDGVVQTXGSGILGMAPRFGCSVDRGTPLLYQGSD 457
           H L   AG G+ +      +  SG++   P  G S    + LL   ++
Sbjct: 54  HQLSAAAGVGLSSQSAQSGSLASGVMSSVPAAGASSSSSSSLLSSSAE 101


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -2

Query: 518 WRRGLVVVLTAGPPYSTKVLTLGRESARGVVKWQSPKTF 402
           WR  +V+   A   Y   ++T       G+V WQ P  +
Sbjct: 110 WRPDIVLYNNADGHYEVTLMTKATVYNNGMVIWQPPAVY 148


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 555 GVVQTXGSGILGMAPRFGCSVDRGTPLLYQ 466
           GV+ T G  I+ +    GC   RGT  +YQ
Sbjct: 531 GVLLTHGYLIMQVPVSEGCGPFRGTQYMYQ 560


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 67  LLKLFSNSVHCASTLTAD 120
           ++ +F+NS HC++ ++ D
Sbjct: 360 MISMFNNSFHCSNFISLD 377


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,372
Number of Sequences: 2352
Number of extensions: 14143
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)