Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40801-7|ABN43096.1|  187|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical p...    28   4.8  
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      28   4.8  
AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty ...    28   4.8  
AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty...    28   4.8  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U42439-5|AAA83509.2|  542|Caenorhabditis elegans Hypothetical pr...    27   8.3  
L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promot...    27   8.3  

>U40801-7|ABN43096.1|  187|Caenorhabditis elegans Hypothetical
           protein F28E10.5 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 409 LGLCHLTTPLALSRPRVRTLVE*GGPAVNTTTKPR 513
           L +CH++TP+ + RPR   +   G PA   TT+ +
Sbjct: 17  LTICHVSTPMVVRRPRDGLVA--GDPAEGPTTEDK 49


>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 527 MPEPXVWTTPSTVSIPQPARSPR 595
           +P P V  TP+ V +P PA +PR
Sbjct: 403 VPTPKVAQTPAPVPVPTPAAAPR 425


>Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical
           protein T13F2.1 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 67  DTYFVISFLLYKQYHLNYIPRA 2
           +T F I F  Y QYH  Y+P A
Sbjct: 135 ETIFTILFAFYLQYHTYYLPSA 156


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 527 MPEPXVWTTPSTVSIPQPARSPR 595
           +P P V  TP+ V +P PA +PR
Sbjct: 403 VPTPKVAQTPAPVPVPTPAAAPR 425


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 527 MPEPXVWTTPSTVSIPQPARSPR 595
           +P P V  TP+ V +P PA +PR
Sbjct: 403 VPTPKVAQTPAPVPVPTPAAAPR 425


>AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty
           acid desaturase protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 67  DTYFVISFLLYKQYHLNYIPRA 2
           +T F I F  Y QYH  Y+P A
Sbjct: 135 ETIFTILFAFYLQYHTYYLPSA 156


>AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty
           acid desaturase protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 67  DTYFVISFLLYKQYHLNYIPRA 2
           +T F I F  Y QYH  Y+P A
Sbjct: 135 ETIFTILFAFYLQYHTYYLPSA 156


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 521  PRMPEPXVWTTPSTVSIPQPARSPR 595
            P+ P      TP+TV++P PA++P+
Sbjct: 1342 PKTPTLPPTPTPATVAVPVPAQTPK 1366


>U42439-5|AAA83509.2|  542|Caenorhabditis elegans Hypothetical
           protein F19C7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 409 LGLCHLTTPLALSRPRVRTLVE*GGPAVNTTT 504
           L +CH++ P+ + RPR   L   G PA   TT
Sbjct: 14  LTICHVSPPMVVGRPREGLLT--GDPAEGPTT 43


>L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promoting
           complex; seealso mat protein 2 protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 184 QKMEIGNYLTRXYGNRHLFIYTYCNREIRXLNASD 288
           Q +++ N L   YG++ LF+  Y N     L++SD
Sbjct: 394 QGVDVFNMLVSVYGSKELFVKEYRNLLAERLSSSD 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,068
Number of Sequences: 27780
Number of extensions: 316025
Number of successful extensions: 826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)