Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.60 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   4.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -2

Query: 518 WRRGLVVVLTAGPPYSTKVLTLGRESARGVVKWQSPKTF 402
           WR  +V+   A   Y   ++T       G+V WQ P  +
Sbjct: 111 WRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVY 149


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 495 VDRGTPLLYQGSDS 454
           VD  TP++ QGSDS
Sbjct: 63  VDNETPVVSQGSDS 76


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -2

Query: 518 WRRGLVVVLTAGPPYSTKVLTLGRESARGVVKWQSPKTF 402
           WR  +V+   A   +   + T      +G+V+W+ P  +
Sbjct: 111 WRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIY 149


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 104 EAQ*TELLNNFKRYLFCYLFFIIQTI 27
           EA    L N   RY+F YL  + Q +
Sbjct: 33  EANVNLLKNRTGRYMFTYLHLLYQDV 58


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = -1

Query: 537 GSGILGMAPRFGCSVDRGTPLLYQGSDSGPRECKGS 430
           G G+ G  P  G     G P+    +  GP   + S
Sbjct: 202 GLGLQGHNPSSGLQPGEGLPMWKSDTSDGPESHQNS 237


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 480 PLLYQGSDSGPRECKGSR 427
           P+ Y     GPR C G+R
Sbjct: 431 PMHYLPFGDGPRNCIGAR 448


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 62  LFCYLFFIIQTIPFKLYT 9
           L  +L  +I  IPF +YT
Sbjct: 163 LAAWLIALISAIPFAIYT 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,770
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)