Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0385
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22450.1 68416.m02837 expressed protein ; expression supporte...    30   1.4  
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ...    27   7.7  
At5g03820.1 68418.m00351 GDSL-motif lipase/hydrolase family prot...    27   7.7  

>At3g22450.1 68416.m02837 expressed protein ; expression supported
           by MPSS
          Length = 311

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 585 LAGCGIETVDGVVQTXGSGILGMAPRFGCSVDRGTPLLYQG 463
           L+GCGIETVD  V    S +     +F     + +P+  QG
Sbjct: 44  LSGCGIETVDDDVWHVSSSLSQAWRQFQADTAKNSPVTIQG 84


>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
           similarity to cytochrome c biogenesis protein CcdA
           [Paracoccus pantotrophus] GI:11095328; contains Pfam
           profile PF02683: Cytochrome C biogenesis protein
           transmembrane region
          Length = 354

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +3

Query: 432 SPCTLSAQSQNLGRVGG-----SRGQHYNQTAAPSLG 527
           SPCTLS     LG +G      SRGQ    T A +LG
Sbjct: 146 SPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALG 182


>At5g03820.1 68418.m00351 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386) and EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 354

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 73  KLFSNSVHCASTLTADFLSAY 135
           K+FS ++H  ST ++DFL +Y
Sbjct: 155 KIFSGAIHLLSTGSSDFLQSY 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,023
Number of Sequences: 28952
Number of extensions: 288560
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)