Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0384
         (573 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Y4M4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_UPI00006CFAD4 Cluster: hypothetical protein TTHERM_0047...    32   8.3  
UniRef50_Q4XDS3 Cluster: Putative uncharacterized protein; n=6; ...    32   8.3  

>UniRef50_Q4Y4M4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 128

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 11  ICYLNTSFAMRP*IMIDV-LFXASSYYYILKV-IFRFNLTLFLL*SFYCVCKILYT 172
           IC++NT F++   +   + L+ A S    L + +F+    L+ L  + CVC  +YT
Sbjct: 62  ICHINTYFSVARNMFFSIFLYYAFSLLIFLSIYVFKMRKALYSLLFYMCVCLYIYT 117


>UniRef50_UPI00006CFAD4 Cluster: hypothetical protein
           TTHERM_00470850; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00470850 - Tetrahymena
           thermophila SB210
          Length = 1507

 Score = 32.3 bits (70), Expect = 8.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 330 KNSNIFEKTALIYSRLKVESNFNSV*YSQISKRICQYFININPYNIFLWW 479
           +NS  +E+ + I SRL   SN +++ Y    K +C +F+ +    + L W
Sbjct: 319 QNSGQYEQKSKIESRLSSYSNKSNI-YDPFDKNVCAFFLKVRNSELGLIW 367


>UniRef50_Q4XDS3 Cluster: Putative uncharacterized protein; n=6;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium chabaudi
          Length = 330

 Score = 32.3 bits (70), Expect = 8.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 73  CIFILLYFKSYFSI*SHAFFAMIILLCLQNF 165
           C FIL ++ SY       FF+ II LCL  F
Sbjct: 82  CFFILYFYNSYTIFVLFVFFSFIISLCLHEF 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,462,034
Number of Sequences: 1657284
Number of extensions: 8547206
Number of successful extensions: 16123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16120
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)