Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0384
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.0  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   6.0  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 19  FKY*FCDASLNYDRCAFXCIFILLYFKSY-FSI*SHAFFAMIILLCLQNF 165
           F + F  + L+  RC     F LL+F S+ FS     F + I ++   +F
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSF 150


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 65  LFXASSYYYILKVIFRFNLTLFLL*SFYCVCKILYTLQFPWSHGRPRC 208
           +F   S +YILK+I +    L+   S   V   +Y    P+ +  PRC
Sbjct: 537 VFSVQSEFYILKLIIQRLYQLYGPVSVTAVLPAMYRGLRPFENDPPRC 584


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 364 INAVFSNILEFLGHGRLKGYSWTL 293
           I  V S +L FL HG  K Y W +
Sbjct: 127 ILGVASVMLGFLAHGMNKAYGWVI 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,818
Number of Sequences: 5004
Number of extensions: 39828
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)