Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0384
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    28   4.1  

>U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical
           protein T28D9.4 protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 457 GLILMKY*HILFDICEY*TELKLLSTFNLE*INAVFSN-ILEFL 329
           GL+     HIL D  +Y  E+KLL TFN+    + + N ILE L
Sbjct: 101 GLLTPPMKHILEDRTKYKNEIKLLKTFNVHLTYSTWINSILEIL 144


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 467 IFMVVGPLVSPHGYTTLPNLVLNTRWAXSSSN 562
           +F ++  L + HGY TL NL  N  W  SSSN
Sbjct: 9   LFWLLFQLHTTHGYNTLVNLAGN--WEFSSSN 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,695
Number of Sequences: 27780
Number of extensions: 218929
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)