Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0383
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.48 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.0  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   6.0  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   7.9  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 606  YTLCIISPVLRRYFLVDFYQNHAIGLV-LFILGHKKPEHIQF 484
            YTL ++ PVLR+  LV F     I    L +  HK P  I F
Sbjct: 3148 YTLAVVHPVLRKQQLVAFIHVKGISASHLIVHDHKDPSLIGF 3189


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 609 GICSGPNIGLAKNGTCE 659
           GI SG   GLA NGTC+
Sbjct: 215 GIVSGLTKGLAPNGTCQ 231


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 600 LCIISPVLRRYFLVDFYQNHAIGLVLF--ILGHKKPEHIQFRPIY 472
           L ++   L  YF+  FY++  +  ++F  ILGH    H+  R IY
Sbjct: 72  LVLLFDALFTYFVAAFYRSSRMPWIIFIVILGHTFSSHV-IRYIY 115


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 85  HKSTPCIYCSVKQKFVHVLAEPWPTF 162
           H+S   +   +  KF+  LA+ WP F
Sbjct: 167 HESLTGVEADITTKFLSTLADTWPEF 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,118
Number of Sequences: 5004
Number of extensions: 59987
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)