Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0383
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF045642-8|AAC02589.1|  205|Caenorhabditis elegans Hypothetical ...    29   3.2  

>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 23  LTNFNQLILKCC*QILKNYYNTNLLHAFTVLLSKSLSMCWPSLGQH 160
           +T    L+     ++LKNY ++ + H +T+ L   LS+ W    QH
Sbjct: 724 ITESGWLMAHLANRVLKNYNSSQVQHDYTLYLRSLLSLSWTYPVQH 769


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 23  LTNFNQLILKCC*QILKNYYNTNLLHAFTVLLSKSLSMCWPSLGQH 160
           +T    L+     ++LKNY ++ + H +T+ L   LS+ W    QH
Sbjct: 724 ITESGWLMAHLANRVLKNYNSSQVQHDYTLYLRSLLSLSWTYPVQH 769


>AF045642-8|AAC02589.1|  205|Caenorhabditis elegans Hypothetical
           protein C17H12.11 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -3

Query: 662 IFTRSVLSQSYIRPRAYAGILYVLYRPYSDDXXXXXXXXTMPSDLCYLFSGTKNLN 495
           + T S++++S I  R YAG+ YV+ +    D         M    CY F    +LN
Sbjct: 12  LITLSIVTKS-IEIRCYAGLKYVVGQEVIQDTENCDAILGMGESYCYKFMEETSLN 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,719
Number of Sequences: 27780
Number of extensions: 330430
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)