Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0382
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    38   0.18 
UniRef50_Q9U2Z6 Cluster: Putative uncharacterized protein duo-3;...    37   0.55 

>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 318 RGRSRKRWSDQVSECLDMRLSHALHCATDRHKWLKITKK 434
           RGR RK+W D + E   +  + A   A DR+ W K T++
Sbjct: 361 RGRQRKQWFDNIKEWTGLTYTEAKRLAQDRNNWRKTTRR 399


>UniRef50_Q9U2Z6 Cluster: Putative uncharacterized protein duo-3;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein duo-3 - Caenorhabditis elegans
          Length = 975

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
 Frame = -3

Query: 500 KWTPLPSVDRSLLSIVMRPPVTFFCNF*PLMSVSGTVKCVAQSHVQT---LRHLVTPSFS 330
           K TP   +DRS +S V++P +        L+S   ++   +    +T    +   T +FS
Sbjct: 154 KHTPTNQMDRSKISFVIKPQINLKNCSRELLSPKSSIFSSSPKPKETSPFYKTTPTKTFS 213

Query: 329 ATTSGLILEN*TN*LVVTSRLPPKSNFQ*TTNLTETISSLSY 204
           +T   L LEN  +   + S  P K NF  T + +++ +S SY
Sbjct: 214 STPKNLKLENLKSPEDIKSPPPIKKNFVATPSTSKSTASYSY 255


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,596,204
Number of Sequences: 1657284
Number of extensions: 13733904
Number of successful extensions: 25551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25547
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)