Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0382
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    29   3.6  
03_01_0279 - 2141327-2141437,2141667-2141789,2141869-2142057,214...    29   4.7  
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    28   8.3  

>11_06_0768 +
           27129007-27129038,27129140-27129220,27129723-27130089,
           27130165-27130255,27130515-27130595,27130764-27131830,
           27132060-27132071,27132465-27133209,27133210-27135244,
           27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 49  LLYSGHFLIHRDGAPYFCPSYSEWRSISQD 138
           L Y G FL++++ AP   P YS + S +QD
Sbjct: 316 LAYYGQFLLNQEAAPMQDPGYSGYISDNQD 345


>03_01_0279 -
           2141327-2141437,2141667-2141789,2141869-2142057,
           2142270-2142989,2144857-2144931
          Length = 405

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 531 TMLAYKPLAIKVDSSSFSRSLIAEHRDAP 445
           T  AY P A + +   FS+ ++ EH DAP
Sbjct: 126 TAPAYYPAATEANIEQFSQIMVPEHTDAP 154


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 336 RWSDQVSECLDMRLSHALHCATDRHKWLKITKKSHRR 446
           R  D ++EC D  + H L+C     K+LK  +    R
Sbjct: 312 RSHDNIAECQDYAVRHTLYCERHIPKFLKRARNGKSR 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,947,881
Number of Sequences: 37544
Number of extensions: 377894
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)