Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0382
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    37   0.016
Z81463-1|CAB03850.1|  342|Caenorhabditis elegans Hypothetical pr...    29   2.4  

>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
 Frame = -3

Query: 500 KWTPLPSVDRSLLSIVMRPPVTFFCNF*PLMSVSGTVKCVAQSHVQT---LRHLVTPSFS 330
           K TP   +DRS +S V++P +        L+S   ++   +    +T    +   T +FS
Sbjct: 154 KHTPTNQMDRSKISFVIKPQINLKNCSRELLSPKSSIFSSSPKPKETSPFYKTTPTKTFS 213

Query: 329 ATTSGLILEN*TN*LVVTSRLPPKSNFQ*TTNLTETISSLSY 204
           +T   L LEN  +   + S  P K NF  T + +++ +S SY
Sbjct: 214 STPKNLKLENLKSPEDIKSPPPIKKNFVATPSTSKSTASYSY 255


>Z81463-1|CAB03850.1|  342|Caenorhabditis elegans Hypothetical
           protein C06B8.1 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 73  IHRDGAPYFCPSYSEWRSISQDEIISSVV-FYENLL 177
           I  D  PYF  +   +++I +DE  SS++ FY+ +L
Sbjct: 174 IQIDSVPYFAANIDVFKNIGRDEYESSIIDFYDGVL 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,682
Number of Sequences: 27780
Number of extensions: 343684
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)