Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0382
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.23 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 464 LSIVMRPPVTFFCNF*PLMSVSGTVKC 384
           +++++ PP  FFC   P+  V  +  C
Sbjct: 125 MTVILTPPGRFFCEVRPIKRVKDSTNC 151


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = -3

Query: 491 PLPSVDRSLLSIVMRPPVTFFCNF*PLMSVSGTVKCVAQSHVQTLR 354
           P  ++D +    V+   ++F+     ++ +   + C AQ HV+++R
Sbjct: 182 PTCALDLTPTYAVVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIR 227


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -2

Query: 549 VFLYFETMLAYKPLAIKVD 493
           +FLYF +++ ++   I++D
Sbjct: 23  IFLYFNSLVRFRRFTIELD 41


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 94  KERHLCVLKSVRC 56
           K   +C+LKS+ C
Sbjct: 154 KNERICILKSITC 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,031
Number of Sequences: 438
Number of extensions: 3767
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)