Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0381
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   2e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.13 
UniRef50_A2VPA1 Cluster: Purine nucleoside phosphorylase deoD; n...    35   2.2  
UniRef50_A3CUA3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 25/46 (54%), Positives = 28/46 (60%)
 Frame = -3

Query: 391 STSVCRSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSP 254
           +T+    P+ F       SRFRS GRFCEA LLLG VLA S  LSP
Sbjct: 67  ATNPKTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSP 112


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 38.7 bits (86), Expect = 0.13
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = -3

Query: 370 PLSFSPDLLSGSRFRSGGRF 311
           PLSFSPDLLSGSRFR+G  +
Sbjct: 396 PLSFSPDLLSGSRFRTGAEY 415


>UniRef50_A2VPA1 Cluster: Purine nucleoside phosphorylase deoD; n=2;
           Mycobacterium tuberculosis C|Rep: Purine nucleoside
           phosphorylase deoD - Mycobacterium tuberculosis C
          Length = 241

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 519 SSLSLDGRTSSRPAQCKWLPEPIDIYNVNAPPTLRYKL*GLKYSYNGCPTIQT 677
           +S S  GR   RP + +W P P      N P   R    G++ SY  CP+++T
Sbjct: 2   TSRSCSGRDGYRPLR-RWAPRPPCCRRPNCPGLCRQPQPGMRASYCPCPSVRT 53


>UniRef50_A3CUA3 Cluster: Putative uncharacterized protein; n=1;
           Methanoculleus marisnigri JR1|Rep: Putative
           uncharacterized protein - Methanoculleus marisnigri
           (strain ATCC 35101 / DSM 1498 / JR1)
          Length = 304

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 388 LNSIALPIPPCNPELIACHHSINSQEGYDWKLWLLAGTVKAVLNPLF 528
           + +  +PI P NPEL+     + ++EG D  LW+L    +A++  L+
Sbjct: 64  VTAFRMPIGPRNPELVGDVVDLAAREGGDTPLWVLDPANEALIRELY 110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,828,745
Number of Sequences: 1657284
Number of extensions: 13095895
Number of successful extensions: 24624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24622
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)