Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0381
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    30   0.28 
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   3.4  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    26   4.5  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 486 ATGWYSQGCVESSLSLDGRTSSRPAQCKWLPEPIDIYNVNAPPT 617
           A+G YSQ   E+SL    R      + K LPE  DIY  ++ P+
Sbjct: 331 ASGPYSQEEEETSLFKSQRKEENEEESKELPEDSDIYGKDSSPS 374


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 448 YDDKQLVPDCRVEWAMQLNSTSVCRSPLSFSPD 350
           YD + +    R +W M  +    CR    FSPD
Sbjct: 223 YDRRMVKKSFRDDWTMNTSPEKDCRCVRKFSPD 255


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 363 LSGLRHTEVEFNCIAHSTLQSGTNCL 440
           L G++HTE     +  + L  G NCL
Sbjct: 476 LEGIKHTEEPIRTVYEAKLSVGLNCL 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,414
Number of Sequences: 5004
Number of extensions: 52939
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)