Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0381
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0657 + 10225503-10226114,10226563-10226879,10226977-102270...    31   0.66 
09_04_0311 + 16585406-16585521,16585713-16586175                       29   3.5  
01_06_1034 + 33962813-33963802                                         29   4.6  
11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976     28   6.1  
09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,859...    28   6.1  
03_05_0154 - 21302056-21302418,21302920-21303198,21304745-213051...    28   6.1  
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    28   8.1  

>03_02_0657 +
           10225503-10226114,10226563-10226879,10226977-10227088,
           10227292-10227423,10227519-10227593
          Length = 415

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 25/68 (36%), Positives = 36/68 (52%)
 Frame = -3

Query: 535 SKEREDSTQP*LYQPVARASSHNPLGY*YYDDKQLVPDCRVEWAMQLNSTSVCRSPLSFS 356
           S E +D+ +  L++ +  +S+ N     Y  +KQ VP+   + AM LNSTS C S   FS
Sbjct: 45  SLEGQDTDRKMLWKKLDNSSTGNS----YLKEKQFVPNNDAKEAMDLNSTS-CYSRQQFS 99

Query: 355 PDLLSGSR 332
              L  SR
Sbjct: 100 RAPLVRSR 107


>09_04_0311 + 16585406-16585521,16585713-16586175
          Length = 192

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 493 PVARASSHNPLGY*YYDDKQLVPDCRVEWAMQLNSTSVCRSPLSFSPD 350
           P A  +   P G+ Y+       DC V+W  + NS  VCR  +   PD
Sbjct: 75  PPAATACRLPCGHLYH------ADCFVQWLSRRNSCPVCRRRVPLFPD 116


>01_06_1034 + 33962813-33963802
          Length = 329

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 424 DCRVEWAMQLNSTSVCRSPLSFSPDLLSGSRFRS 323
           +C + W +Q NS  VCR PL  S      +R  S
Sbjct: 217 ECIIPWLVQHNSCPVCRHPLPSSSHRSGSTRSSS 250


>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
          Length = 211

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 409 WAMQ-LNSTSVCRSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSG 263
           WA + L + S   + + F+PD L G   RSG     ARL      AT+ G
Sbjct: 3   WAARFLTAVSFLAAGVLFAPDALLGGSGRSGAGVAAARLAHVLCFATAWG 52


>09_02_0404 -
           8592872-8593231,8593735-8594004,8595551-8595964,
           8596249-8596398
          Length = 397

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 357 EKLSGLRHTEVEFNCIAHSTLQSGTN 434
           E L+ LR   V  NC AH+ ++SG N
Sbjct: 216 ELLTDLRSASVNNNCYAHAAVKSGLN 241


>03_05_0154 -
           21302056-21302418,21302920-21303198,21304745-21305158,
           21305443-21305592
          Length = 401

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 357 EKLSGLRHTEVEFNCIAHSTLQSGTN 434
           E L+ LR   V  NC AH+ ++SG N
Sbjct: 216 ELLTDLRSASVNNNCYAHAAVKSGLN 241


>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 207 SLGRKKKCLKIIADSLRNILQI 142
           SLG+KKK   ++A SL+NI+ I
Sbjct: 581 SLGKKKKLKPLLASSLQNIITI 602


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,186
Number of Sequences: 37544
Number of extensions: 377326
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)