Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0381
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58039| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_12675| Best HMM Match : Cornichon (HMM E-Value=2.3)                 28   8.3  

>SB_58039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -3

Query: 544 VLPSKEREDSTQP*----LYQPVARASSHNPLGY*YYDDKQLV---PDCRVEWAMQLN 392
           VLPS E+ +S +P     L +P  R SSH+P    YY+   +V   PD       QLN
Sbjct: 20  VLPSMEQSNSCRPGDPLVLERPPPRWSSHSPYSESYYNSLAVVLQRPDWENPGVTQLN 77


>SB_12675| Best HMM Match : Cornichon (HMM E-Value=2.3)
          Length = 225

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 636 LTTYISRWVARLRCRCLWAPVTTYIGLVVS 547
           +T YI+R+V R   RCL   VT Y+   V+
Sbjct: 57  VTRYITRYVTRYLTRCLTRYVTRYMSRYVT 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,664,591
Number of Sequences: 59808
Number of extensions: 408025
Number of successful extensions: 795
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)