Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0380
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    31   0.19 
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   2.4  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   4.2  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   4.2  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -3

Query: 320 VKLHNIPI-----ETGGIPKTLINYLQQPNVVSIQNAK 222
           VK+H+I I     ET   PKT+  Y+ QPN +S ++A+
Sbjct: 179 VKVHSIAITPVKGETSSAPKTIKLYINQPNNLSFEDAE 216


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 618 EHIRXXSPVYRVATASRQILGNSEAIFVVGSI*RQH 511
           E  R  SP+   ATA  ++ G SEA  ++ S+ RQH
Sbjct: 200 EEYRRCSPIAVKATAGLRLTGESEAKAILKSV-RQH 234


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 CYNNSTTIIPLHFGLTQHWAVADN*SMS*EYLQF 295
           C NNS+ ++  +     H  VADN ++S +++ F
Sbjct: 437 CSNNSSDLLERNMSYNAHPYVADNLNISSDHISF 470


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 520 LYTSHHKNSFTIAQDLSTCRSYTIH 594
           L+T HH+++FTI + L   R    H
Sbjct: 298 LHTFHHEHTFTIDEGLDALRDVIYH 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,911
Number of Sequences: 5004
Number of extensions: 58136
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)