Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0380
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991...    30   1.4  
07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974     29   4.3  
08_01_0490 + 4284192-4284740                                           28   7.5  
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    27   9.9  
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246...    27   9.9  
03_02_0850 + 11775232-11776077,11776761-11777321                       27   9.9  

>02_02_0631 -
           12397517-12398452,12398693-12398819,12398971-12399154,
           12399303-12399395,12400029-12400077,12400565-12400624,
           12400689-12400730,12400840-12400992,12401075-12401206,
           12401313-12401408,12401936-12402079,12402234-12402308,
           12403896-12404021
          Length = 738

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 280 LRH*SIICNSPMLCQSKMQRYNSST 206
           LR   + C+SP  CQS+ QR +SST
Sbjct: 513 LRENDVYCDSPKSCQSESQRSDSST 537


>07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974
          Length = 392

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 566 CLLAVATRYTGLXKRICSDC*SCI 637
           C L VA R  GL K  C DC  C+
Sbjct: 51  CSLKVAGRCMGLCKMCCHDCGGCV 74


>08_01_0490 + 4284192-4284740
          Length = 182

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 341 LELAGRTVKLHNIPIETGGIPKTLINYLQQPNVV 240
           L+LAG  V + + P ETGG P      L+QP V+
Sbjct: 30  LQLAGAKVLVRDAPPETGGGPHHNAILLRQPPVM 63


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 23  KIEKRCHHVLHHY 61
           K+ ++CHHVLH Y
Sbjct: 181 KLRRKCHHVLHSY 193


>04_04_0451 -
           25323178-25323241,25323614-25323741,25324533-25324634,
           25325314-25325382,25325489-25325557,25325646-25325720,
           25325805-25325909,25326394-25326492,25326626-25328344,
           25328629-25328931,25329031-25329129,25329733-25329850,
           25329933-25330018,25330091-25330159,25330232-25330306,
           25330675-25330772,25331271-25331432,25332391-25332556,
           25332902-25332970,25333064-25333126,25333221-25333376,
           25334027-25334365
          Length = 1410

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 506 DLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRIC 616
           D C + IL   KI+ +LPRI   A   R   L  R C
Sbjct: 394 DTCIKTILRNCKISRILPRIADTAKNDRSAVLRARCC 430


>03_02_0850 + 11775232-11776077,11776761-11777321
          Length = 468

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -2

Query: 438 YTVCVFLITAQSSGQSPCSKIR*RHDSAATITLRAGWSHCETSQHS 301
           Y + + L+ ++    +PC  +R RH +AA +     ++    ++HS
Sbjct: 125 YWLTLDLLASEQGAPTPCGAVRVRHAAAADVVFVPFFASLSFNRHS 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,323,418
Number of Sequences: 37544
Number of extensions: 343274
Number of successful extensions: 564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)