Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0380
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21459| Best HMM Match : LRR_1 (HMM E-Value=1.8e-11)                 64   1e-10
SB_10069| Best HMM Match : VWC (HMM E-Value=2.4)                       31   1.1  
SB_37027| Best HMM Match : VWC (HMM E-Value=2.4)                       31   1.1  
SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)               30   1.4  
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)                   29   3.3  

>SB_21459| Best HMM Match : LRR_1 (HMM E-Value=1.8e-11)
          Length = 137

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/52 (55%), Positives = 39/52 (75%)
 Frame = -3

Query: 413 QLSLRDNPLVVRSVRDMTLQPPSLLELAGRTVKLHNIPIETGGIPKTLINYL 258
           +LSLRDNPLVVR VRDM  +PPSLLEL+GR +K +++      +P  L++YL
Sbjct: 73  ELSLRDNPLVVRFVRDMAFKPPSLLELSGRCIKNNSVRYSKEDLPPQLLSYL 124


>SB_10069| Best HMM Match : VWC (HMM E-Value=2.4)
          Length = 289

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L  +A  Y  L    C+
Sbjct: 44  NMFDYCTSTLLPSTRICSIIVRV-LYCLAPEYARLLYECCT 83



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L   A  Y  L    C+
Sbjct: 176 NMLDYCTSTLLPSTRICSIIVRV-LYCRAPEYARLLYECCT 215



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L   A  Y  L    C+
Sbjct: 88  NMFDYCTNAVLPSTRICSIIVRM-LYCRAPEYVRLLYECCT 127



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L   A  Y  L    C+
Sbjct: 132 NMFDYCTSAVLPSTRICSIIVRV-LHCRAPEYVRLLYECCT 171


>SB_37027| Best HMM Match : VWC (HMM E-Value=2.4)
          Length = 289

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L  +A  Y  L    C+
Sbjct: 44  NMFDYCTSTLLPSTRICSIIVRV-LYCLAPEYARLLYECCT 83



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L   A  Y  L    C+
Sbjct: 176 NMLDYCTSTLLPSTRICSIIVRV-LYCRAPEYARLLYECCT 215



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L   A  Y  L    C+
Sbjct: 88  NMFDYCTNAVLPSTRICSIIVRM-LYCRAPEYVRLLYECCT 127



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 NLCDLCCRYILPTTKIASLLPRICLLAVATRYTGLXKRICS 619
           N+ D C   +LP+T+I S++ R+ L   A  Y  L    C+
Sbjct: 132 NMFDYCTSAVLPSTRICSIIVRV-LHCRAPEYVRLLYECCT 171


>SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)
          Length = 536

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 104 HIGVPPCKVYICYLSSLVVFEHKLIQKQFICYNNSTTIIPLHF 232
           H  V P K   C L+ L +F  +L +++F   NN+  I   HF
Sbjct: 214 HSNVDPMKCQHCDLTFLEIFSLELHRREFKMLNNACRICQRHF 256


>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
          Length = 470

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 249 GLLQIIDQCLRNTSSFNWNVVKFHSATSQL 338
           GL ++ D CL      NW+ ++ H A  ++
Sbjct: 116 GLKRLRDDCLHTVKKLNWSTIRSHEAYEEI 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,715,170
Number of Sequences: 59808
Number of extensions: 424560
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)