Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0380
         (658 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113577-1|AAM29582.1|  377|Drosophila melanogaster RH29237p pro...    65   7e-11
AE014298-1463|AAF46596.2|  377|Drosophila melanogaster CG32687-P...    65   7e-11

>AY113577-1|AAM29582.1|  377|Drosophila melanogaster RH29237p
           protein.
          Length = 377

 Score = 65.3 bits (152), Expect = 7e-11
 Identities = 35/64 (54%), Positives = 40/64 (62%)
 Frame = -3

Query: 413 QLSLRDNPLVVRSVRDMTLQPPSLLELAGRTVKLHNIPIETGGIPKTLINYLQQPNVVSI 234
           +LSLRDNPLVVR V+DM L+PP+LLELAGR VK          IP+TL  YL   N    
Sbjct: 251 ELSLRDNPLVVRFVQDMALKPPTLLELAGRMVKASGQRPGPYDIPRTLAEYLNSANCCVN 310

Query: 233 QNAK 222
            N K
Sbjct: 311 PNCK 314



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 255 TAQCCVNPKCKGI 217
           +A CCVNP CKG+
Sbjct: 304 SANCCVNPNCKGV 316


>AE014298-1463|AAF46596.2|  377|Drosophila melanogaster CG32687-PA
           protein.
          Length = 377

 Score = 65.3 bits (152), Expect = 7e-11
 Identities = 35/64 (54%), Positives = 40/64 (62%)
 Frame = -3

Query: 413 QLSLRDNPLVVRSVRDMTLQPPSLLELAGRTVKLHNIPIETGGIPKTLINYLQQPNVVSI 234
           +LSLRDNPLVVR V+DM L+PP+LLELAGR VK          IP+TL  YL   N    
Sbjct: 251 ELSLRDNPLVVRFVQDMALKPPTLLELAGRMVKASGQRPGPYDIPRTLAEYLNSANCCVN 310

Query: 233 QNAK 222
            N K
Sbjct: 311 PNCK 314



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 255 TAQCCVNPKCKGI 217
           +A CCVNP CKG+
Sbjct: 304 SANCCVNPNCKGV 316


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,911,090
Number of Sequences: 53049
Number of extensions: 620357
Number of successful extensions: 1566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)