Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0380
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    51   6e-07
AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical ...    47   1e-05
Z66561-6|CAA91456.1|  174|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical p...    28   5.1  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   5.1  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   5.1  

>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
 Frame = -3

Query: 413 QLSLRDNPLVVRSVRDMTLQPPSLLELAGRTVK--LHNIPIETGGIPKTLINYL 258
           QLSLR+NPLV   V +M L PPSL EL+GRTV+   H +P     +P  L+ YL
Sbjct: 248 QLSLRNNPLVHSFVHNMDLAPPSLKELSGRTVRQNYHKVPNLDEILPSDLVAYL 301


>AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3b protein.
          Length = 295

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/40 (60%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
 Frame = -3

Query: 413 QLSLRDNPLVVRSVRDMTLQPPSLLELAGRTVK--LHNIP 300
           QLSLR+NPLV   V +M L PPSL EL+GRTV+   H +P
Sbjct: 248 QLSLRNNPLVHSFVHNMDLAPPSLKELSGRTVRQNYHKVP 287


>Z66561-6|CAA91456.1|  174|Caenorhabditis elegans Hypothetical
           protein F08G12.4 protein.
          Length = 174

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = -3

Query: 389 LVVRSVRDMTLQPPSLLELAGRTVKLHN---IPIETGGIPKTL 270
           L+VR+   +T++  SL E+AGR+   HN   +P +  G+P+ L
Sbjct: 100 LIVRNHCVITMKVQSLREIAGRSFLRHNPTEVPNKIKGLPREL 142


>Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical
           protein C50B6.8 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +2

Query: 53  HHYDSCISIS*KVRNGEHIGVPPCKVYICYLSSLVVFEHKLIQKQ-FICYNNSTTIIPL 226
           H   S  SI  K  NG H  VP C     +   L V E   I K    C+N +   +PL
Sbjct: 44  HQRPSECSICGKTANGYHYDVPSCNGCKTFFRRLCVSEKSFICKAGGDCFNLTKRKVPL 102


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 308 NIPIETGGIPKTLINYLQQPNVVS 237
           N+PI+T G+P+T+   L  P +V+
Sbjct: 366 NLPIDTVGVPRTIAQNLTFPEIVT 389


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 308 NIPIETGGIPKTLINYLQQPNVVS 237
           N+PI+T G+P+T+   L  P +V+
Sbjct: 366 NLPIDTVGVPRTIAQNLTFPEIVT 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,685,151
Number of Sequences: 27780
Number of extensions: 333978
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)