Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0380
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31770.1 68414.m03899 ABC transporter family protein contains...    32   0.39 
At1g76590.1 68414.m08912 zinc-binding family protein similar to ...    27   8.3  
At1g21000.1 68414.m02628 zinc-binding family protein similar to ...    27   8.3  

>At1g31770.1 68414.m03899 ABC transporter family protein contains
           Pfam profile: PF00005: ABC transporter
          Length = 648

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 57  WCNTWWHRFSILFQ 16
           WC TWW++F++L Q
Sbjct: 378 WCTTWWYQFTVLLQ 391


>At1g76590.1 68414.m08912 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 245

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 494 TNLCDLCCRYILPTTKIASL 553
           TN C++CCR +L + +  SL
Sbjct: 121 TNTCEICCRSLLDSFRFCSL 140


>At1g21000.1 68414.m02628 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 246

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 494 TNLCDLCCRYILPTTKIASL 553
           TN C++CCR +L + +  SL
Sbjct: 119 TNTCEICCRSLLDSFRFCSL 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,312,525
Number of Sequences: 28952
Number of extensions: 290510
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)