Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0379
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   4.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = +1

Query: 424 GQRVLAATRVKRHLKFYFNVFL-------IVYCIYNSIYYY 525
           G  +L+ + VK H +FY +VFL        ++ IY  + YY
Sbjct: 124 GFDILSFSNVKNHNRFYAHVFLSWLFFGFTIFIIYRELRYY 164


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 396 HHYLFLLYIWSESFGSNPSEASLKVLF*CFFN 491
           ++ +FLL   S  FG N + A++ +LF C FN
Sbjct: 831 NYKVFLLSTKSGGFGINLTCANIVILFDCSFN 862


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 669 TEHEFPQIFFFDKKKTVTAHVATVLFQ*FLTNREQRLLTFNTQKNAQ 529
           TEH   + F FD       H+A   F   LT+R++  L  +   N Q
Sbjct: 393 TEHSEIEDFHFDPYSEKGVHIAMRYFDAALTHRDRECLIHDLCDNDQ 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,526
Number of Sequences: 5004
Number of extensions: 44799
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)