Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0379
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z49132-10|CAE18050.1|  163|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016419-2|AAG24055.2|  325|Caenorhabditis elegans Serpentine re...    27   9.8  

>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 557 NNRCSRLVRNHWNRTVATWAVTVF 628
           N++ +RLVR  WN ++ T AV VF
Sbjct: 501 NDQMTRLVRREWNDSLPTDAVLVF 524


>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 554 VNNRCSRLVRNHWNRTVATWAVTVFFLSKKKIC 652
           + N C   + NHW+  +AT AV     S   IC
Sbjct: 15  IENACPEFIPNHWDLVLATIAVFGVVASLILIC 47


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 554 VNNRCSRLVRNHWNRTVATWAVTVFFLSKKKIC 652
           + N C   + NHW+  +AT AV     S   IC
Sbjct: 15  IENACPEFIPNHWDLVLATIAVFGVVASLILIC 47


>Z49132-10|CAE18050.1|  163|Caenorhabditis elegans Hypothetical
           protein ZK666.12 protein.
          Length = 163

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 1   KTMH*FFTLFSLCINISFTLSL 66
           K +H ++T F LC+ I FTL L
Sbjct: 60  KNLHDWYTTFLLCLFIGFTLDL 81


>Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical
           protein ZK1058.1 protein.
          Length = 744

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 429 LTIYIIRISNGGPLRFLLMGSLMSKNIK*FMVLSNNYYY 313
           L +Y++     G  R LL G++ +  +K FMV  N Y Y
Sbjct: 188 LAMYVVAAEEAGVSRKLLAGTIQNDILKEFMV-RNTYIY 225


>AF016419-2|AAG24055.2|  325|Caenorhabditis elegans Serpentine
           receptor, class j protein32 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/51 (19%), Positives = 26/51 (50%)
 Frame = +1

Query: 397 TITYSYYIYGQRVLAATRVKRHLKFYFNVFLIVYCIYNSIYYYKLGVFLCI 549
           TI  S+++Y    +  +     L  YF +  +++C+  S+++  +  F+ +
Sbjct: 103 TILISHFVYRYLAVLGSIFINRLFPYFMIVTLLFCVIASMFWIMIAYFVAV 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,918
Number of Sequences: 27780
Number of extensions: 241222
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)