Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0379
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SD...    29   3.0  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    29   3.9  

>At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SDR)
           family protein similar to carbonyl reductase GI:1049108
           from [Mus musculus]
          Length = 295

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 391 WPTITYSYYIYGQRVLAATRV--KRHLKFYFN 480
           WPT+   Y +    V+A TRV  KRH  F  N
Sbjct: 213 WPTVMSGYILSKAAVIALTRVLAKRHKSFIIN 244


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 457 RHLKFYFNVFLIVYCIYNSIYYYKLGVFLCI 549
           +H+ F +N  +++ C+  S++Y  L +  C+
Sbjct: 54  KHISFSYNKLVLICCVSLSVFYSVLSLLSCL 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,290
Number of Sequences: 28952
Number of extensions: 204088
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)