Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0378
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.4  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   4.5  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   7.9  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.9  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 349 NSCLKHRQQAPYRLSINKRNHSRQKVTYY 435
           + CLKH     Y+ +  KR+HSR +  ++
Sbjct: 90  DQCLKHNIPCIYKSNSTKRSHSRHEEIHH 118


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 70  KLCDFFFLFSVSLGLNV 20
           + CD FFLF +SLG+ +
Sbjct: 158 RFCDLFFLFVLSLGIGL 174


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +3

Query: 24  FKPKETLNRKKKSHNFTPRVP------AKKSLNNIQVFQVP 128
           +KP+ET  R  +S   TP V       +K +  NI++ ++P
Sbjct: 13  YKPQETQRRLSRSSTITPSVSEYRSGFSKTAFGNIELEEIP 53


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 449 ISLHLISFIFTLIDY*F 499
           IS+HL+  ++TLIDY F
Sbjct: 63  ISVHLMPTVYTLIDYLF 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,102
Number of Sequences: 5004
Number of extensions: 46471
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)