Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0378
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02310.1 68414.m00176 glycosyl hydrolase family protein 5 / c...    29   3.9  
At1g63460.1 68414.m07176 glutathione peroxidase, putative contai...    28   6.8  

>At1g02310.1 68414.m00176 glycosyl hydrolase family protein 5 /
           cellulase family protein / (1-4)-beta-mannan
           endohydrolase, putative similar to (1-4)-beta-mannan
           endohydrolase precursor GI:9836826 from [Lycopersicon
           esculentum]
          Length = 411

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 474 MNEIKCSEMRRKEIICDFLARMVSFVYGESVRSLLSVF*TGIFFGEKLSXR 322
           +NE +C++     I+ D++  M S+V       LL +   G F+GE +  R
Sbjct: 196 INEPRCNDSTASNILQDWVKEMASYVKSIDSNHLLEIGLEG-FYGESIPER 245


>At1g63460.1 68414.m07176 glutathione peroxidase, putative contains
           Pfam profile: PF00255 glutathione peroxidases
          Length = 167

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 643 LKNVNWDFFSDSLQWNFS 696
           LK   W  F D +QWNF+
Sbjct: 116 LKKGKWGIFGDDIQWNFA 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,938
Number of Sequences: 28952
Number of extensions: 227782
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)