Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0377
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         30   1.5  
03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083     29   2.7  
06_01_0092 - 775290-775691                                             28   8.2  
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           28   8.2  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 430 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRXSWVT 296
           N+N YNL F +  +   + R      +L ++++ GC   R +W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083
          Length = 180

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 576 ERGLQRQRAKNRLSGRWAHYVNHHPNQVF 662
           E    RQR  +R SGRW    NH  N  F
Sbjct: 112 ETARNRQRVSHRRSGRWRWMQNHDNNTTF 140


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 364 RASSLLRQLAKGGCAARR 311
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 531 RVECCSSLEQESTIKERGLQRQRAKNRLSGRWAHYVNHHPNQVFWGRGAVKH*IG 695
           R++ C +L     I+ + +++ R +   + +W + V   PN V     A+K  +G
Sbjct: 67  RIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVG 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,137,144
Number of Sequences: 37544
Number of extensions: 388290
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)