Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0377
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 346  RQLAKGGCAARRXSWVTPGFSQSRRCKTTARNCNTTHYRANWVPG 212
            +Q  +  C +       P   +  R  T+ R C+T++    WVPG
Sbjct: 1772 KQTRRVHCISTSGKRAAPRMCELARAPTSIRECDTSNCPYEWVPG 1816


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 346  RQLAKGGCAARRXSWVTPGFSQSRRCKTTARNCNTTHYRANWVPG 212
            +Q  +  C +       P   +  R  T+ R C+T++    WVPG
Sbjct: 1772 KQTRRVHCISTSGKRAAPRMCELARAPTSIRECDTSNCPYEWVPG 1816


>Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical
           protein R08H2.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 78  FSIIDRSNLCFQHSKQSFCFSHNCHGAEKARLLCLVFMLDHC 203
           +SI+  ++    HS ++ C S N +    +R L  +F++D C
Sbjct: 57  YSILSFTSGMMAHSTETSCISFNLYHGYVSRDLAPIFLVDFC 98


>U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical
           protein C08A9.9 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 346 RQLAKGGCAARRXSWVTPGFSQSRRCKTTARNCNTTHY 233
           +Q A    A R+ + VTP  S++ R    A N   THY
Sbjct: 191 QQSASSPPAVRQSAIVTPSASENNRTSNAASNGKQTHY 228


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 45  ESFKQPRASSKFSIIDRSNLCFQHSKQSFCFSHNCHGAEKAR 170
           +  KQP+ +   +++  +  C Q +K++  + H C   EK +
Sbjct: 99  KELKQPQVAEAVNLMQTTTTCLQKAKET--YQHRCQELEKVK 138


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 45  ESFKQPRASSKFSIIDRSNLCFQHSKQSFCFSHNCHGAEKAR 170
           +  KQP+ +   +++  +  C Q +K++  + H C   EK +
Sbjct: 116 KELKQPQVAEAVNLMQTTTTCLQKAKET--YQHRCQELEKVK 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,111
Number of Sequences: 27780
Number of extensions: 323244
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)