Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0377
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.8  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.5  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.5  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 165 ARLLCLVFMLDHCKGGP 215
           A LL +VF+ D C G P
Sbjct: 10  AVLLAIVFLFDKCSGYP 26


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 313 ALQHIPLSPAGVIAKRPAPIALPNSC 390
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 587 ESTFFNSGLLFQTGTTLNPI 528
           E  +  SG L+   TT+NPI
Sbjct: 307 EWLYILSGCLYYFSTTINPI 326


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 313 ALQHIPLSPAGVIAKRPAPIALPNSC 390
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,899
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)